Biological Applications References

Ibrutinib inhibition of ERBB4 reduces cell growth in a WNT5A-dependent manner. Rauf F, Festa F, Park JG, Magee M, Eaton S, Rinaldi C, Betanzos CM, Gonzalez-Malerva L, LaBaer J. Oncogene. 2018 Feb 5. doi: 10.1038/s41388-017-0079-x. [Epub ahead of print]

Ibrutinib inhibition of ERBB4 reduces cell growth in a WNT5A-dependent manner. Rauf F, Festa F, Park JG, Magee M, Eaton S, Rinaldi C, Betanzos CM, Gonzalez-Malerva L, LaBaer J. Oncogene. 2018 Feb 5. doi: 10.1038/s41388-017-0079-x. [Epub ahead of print]

Autoantibody biomarkers for the detection of serous ovarian cancer. Katchman BA, Chowell D, Wallstrom G, Vitonis AF, LaBaer J, Cramer DW, Anderson KS. Gynecol Oncol. 2017 Jul;146(1):129-136. doi: 10.1016/j.ygyno.2017.04.005. Epub 2017 Apr 18

Identification of Antibody Against SNRPB, Small Nuclear Ribonucleoprotein-Associated Proteins B and B’, as an Autoantibody Marker in Crohn’s Disease using an Immunoproteomics Approach. Wang H, Demirkan G, Bian X, Wallstrom G, Barker K, Karthikeyan K, Tang Y, Pasha SF, Leighton JA, Qiu J, LaBaer J. J Crohns Colitis. 2017 Jul 1;11(7):848-856. doi: 10.1093/ecco-jcc/jjx019.

Identification of Antibody Targets for Tuberculosis Serology using High-Density Nucleic Acid Programmable Protein Arrays. Song L, Wallstrom G, Yu X, Hopper M, Van Duine J, Steel J, Park J, Wiktor P, Kahn P, Brunner A, Wilson D, Jenny-Avital ER, Qiu J, Labaer J, Magee DM, Achkar JM. Mol Cell Proteomics. 2017 Apr;16(4 suppl 1):S277-S289. doi: 10.1074/mcp.M116.065953. Epub 2017 Feb 21.

Tracking the Antibody Immunome in Type 1 Diabetes Using Protein Arrays. Bian X, Wasserfall C, Wallstrom G, Wang J, Wang H, Barker K, Schatz D, Atkinson M, Qiu J, LaBaer J. J Proteome Res. 2017 Jan 6;16(1):195-203. doi: 10.1021/acs.jproteome.6b00354. Epub 2016 Oct 17.

Mapping transcription factor interactome networks using HaloTag protein arrays. Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SS, Chen H, Ramachandran N, Altmann S, Gutiérrez RA, Hill DE, Schroeder JI, Chory J, LaBaer J, Vidal M, Braun P, Ecker JR. Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):E4238-47. doi: 10.1073/pnas.1603229113. Epub 2016 Jun 29.

Proteomic mapping of p53 immunogenicity in pancreatic, ovarian, and breast cancers. Katchman BA, Barderas R, Alam R, Chowell D, Field MS, Esserman LJ, Wallstrom G, LaBaer J, Cramer DW, Hollingsworth MA, Anderson KS. Proteomics Clin Appl. 2016 Jul;10(7):720-31. doi: 10.1002/prca.201500096. Epub 2016 May 17.

Comparative Study of Autoantibody Responses between Lung Adenocarcinoma and Benign Pulmonary Nodules. Wang J, Shivakumar S, Barker K, Tang Y, Wallstrom G, Park JG, Tsay JC, Pass HI, Rom WN, LaBaer J, Qiu J. J Thorac Oncol. 2016 Mar;11(3):334-45. doi: 10.1016/j.jtho.2015.11.011. Epub 2016 Feb 16.

Immunoproteomic Profiling of Antiviral Antibodies in New-Onset Type 1 Diabetes Using Protein Arrays. Bian X, Wallstrom G, Davis A, Wang J, Park J, Throop A, Steel J, Yu X, Wasserfall C, Schatz D, Atkinson M, Qiu J, LaBaer J. Diabetes. 2016 Jan;65(1):285-96. doi: 10.2337/db15-0179. Epub 2015 Oct 8.

Nonenzymatic Protein Acetylation Detected by NAPPA Protein Arrays. Olia AS, Barker K, McCullough CE, Tang HY, Speicher DW, Qiu J, LaBaer J, Marmorstein R. ACS Chem Biol. 2015 Sep 18;10(9):2034-47. doi: 10.1021/acschembio.5b00342. Epub 2015 Jun 23.

Plasma Autoantibodies Associated with Basal-like Breast Cancers. Wang J, Figueroa JD, Wallstrom G, Barker K, Park JG, Demirkan G, Lissowska J, Anderson KS, Qiu J, LaBaer J. Cancer Epidemiol Biomarkers Prev. 2015 Sep;24(9):1332-40. doi: 10.1158/1055-9965.EPI-15-0047. Epub 2015 Jun 12.

Host-pathogen interaction profiling using self-assembling human protein arrays. Yu X, Decker KB, Barker K, Neunuebel MR, Saul J, Graves M, Westcott N, Hang H, LaBaer J, Qiu J, Machner MP. J Proteome Res. 2015 Apr 3;14(4):1920-36. doi: 10.1021/pr5013015. Epub 2015 Mar 18.

Autoantibody signature for the serologic detection of ovarian cancer. Anderson KS, Cramer DW, Sibani S, Wallstrom G, Wong J, Park J, Qiu J, Vitonis A, LaBaer J. J Proteome Res. 2015 Jan 2;14(1):578-86. doi: 10.1021/pr500908n. Epub 2014 Nov 17.

Copper-catalyzed azide-alkyne cycloaddition (click chemistry)-based detection of global pathogen-host AMPylation on self-assembled human protein microarrays. Yu X, Woolery AR, Luong P, Hao YH, Grammel M, Westcott N, Park J, Wang J, Bian X, Demirkan G, Hang HC, Orth K, LaBaer J. Mol Cell Proteomics. 2014 Nov;13(11):3164-76. doi: 10.1074/mcp.M114.041103. Epub 2014 Jul 29.

Serological autoantibody profiling of type 1 diabetes by protein arrays. Miersch S, Bian X, Wallstrom G, Sibani S, Logvinenko T, Wasserfall CH, Schatz D, Atkinson M, Qiu J, LaBaer J. J Proteomics. 2013 Dec 6;94:486-96. doi: 10.1016/j.jprot.2013.10.018. Epub 2013 Oct 20.

Self-assembled protein arrays from an Ornithodoros moubata salivary gland expression library. Manzano-Román R, Díaz-Martín V, González-González M, Matarraz S, Álvarez-Prado AF, LaBaer J, Orfao A, Pérez-Sánchez R, Fuentes M. J Proteome Res. 2012 Dec 7;11(12):5972-82. doi: 10.1021/pr300696h. Epub 2012 Nov 20.

Circulating and synovial antibody profiling of juvenile arthritis patients by nucleic acid programmable protein arrays. Gibson DS, Qiu J, Mendoza EA, Barker K, Rooney ME, LaBaer J. Arthritis Res Ther. 2012 Apr 17;14(2):R77. doi: 10.1186/ar3800.

Detection of multiple autoantibodies in patients with ankylosing spondylitis using nucleic acid programmable protein arrays. Wright C, Sibani S, Trudgian D, Fischer R, Kessler B, LaBaer J, Bowness P. Mol Cell Proteomics. 2012 Feb;11(2):M9.00384. doi: 10.1074/mcp.M9.00384.

Serum antibodies to the HPV16 proteome as biomarkers for head and neck cancer. Anderson KS, Wong J, D’Souza G, Riemer AB, Lorch J, Haddad R, Pai SI, Longtine J, McClean M, LaBaer J, Kelsey KT, Posner M. Br J Cancer. 2011 Jun 7;104(12):1896-905. doi: 10.1038/bjc.2011.171.

Protein microarray signature of autoantibody biomarkers for the early detection of breast cancer. Anderson KS, Sibani S, Wallstrom G, Qiu J, Mendoza EA, Raphael J, Hainsworth E, Montor WR, Wong J, Park JG, Lokko N, Logvinenko T, Ramachandran N, Godwin AK, Marks J, Engstrom P, Labaer J. J Proteome Res. 2011 Jan 7;10(1):85-96. doi: 10.1021/pr100686b. Epub 2010 Nov 23.

Systematic analysis of the IgG antibody immune response against varicella zoster virus (VZV) using a self-assembled protein microarray. Ceroni A, Sibani S, Baiker A, Pothineni VR, Bailer SM, LaBaer J, Haas J, Campbell CJ. Mol Biosyst. 2010 Sep;6(9):1604-10. doi: 10.1039/c003798b. Epub 2010 Jun 1.

Use of a single-chain antibody library for ovarian cancer biomarker discovery. Ramirez AB, Loch CM, Zhang Y, Liu Y, Wang X, Wayner EA, Sargent JE, Sibani S, Hainsworth E, Mendoza EA, Eugene R, Labaer J, Urban ND, McIntosh MW, Lampe PD. Mol Cell Proteomics. 2010 Jul;9(7):1449-60. doi: 10.1074/mcp.M900496-MCP200. Epub 2010 May 13.

Genome-wide study of Pseudomonas aeruginosa outer membrane protein immunogenicity using self-assembling protein microarrays. Montor WR, Huang J, Hu Y, Hainsworth E, Lynch S, Kronish JW, Ordonez CL, Logvinenko T, Lory S, LaBaer J. Infect Immun. 2009 Nov;77(11):4877-86. doi: 10.1128/IAI.00698-09. Epub 2009 Sep 8.